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Haney*, S., O. Bedolla* and J.B. Clark. 2022. DNA barcodes for Great Salt Lake brine flies establish a baseline for monitoring changes in biodiversity. Inland Waters. doi.org/10.1080/20442041.2022.2144084 [*Undergraduate Students]

Truong*, A., M. Sondossi and J.B. Clark. 2016. Genetic identification of Wolbachia from Great Salt Lake brine flies. Symbiosis DOI 10.1007/s13199-016-0446-3. [*Undergraduate student]

Llorens, J.V., J.B. Clark, I. Martínez-Garay, S. Soriano, R. de Frutos and M.J. Martínez-Sebastián. 2008. Gypsy endogenous retrovirus maintains potential infectivity in several species of Drosophilids. BMC Evolutionary Biology 8:302-310. [Sabbatical research]

J.S. Silva, E. L. Loreto, and Clark, J.B. 2004. Factors that affect the horizontal transfer of transposable elements. Current Issues Mol. Biol. 6:57-72.

Clark, J.B., J.S. Silva, and M.G. Kidwell. 2002. Evidence for horizontal transfer of P transposable elements. In: Horizontal Gene Transfer, second edition. M. Syvanen and C. Kado, eds. pp. 161-171. Academic Press, London.

Colton*, L. and J.B. Clark. 2001. Comparison of DNA isolation methods and storage conditions for successful amplification of Drosophila genes using PCR. Dros. Info. Service 84:180-182. [*Undergraduate student]

Lee, S. H., J.B. Clark, and M.G. Kidwell. 1999. A P element-homologous sequence in the house fly, Musca domestica. Insect Mol. Biol. 8:491-500.

García-Planells, J., N. Paricio, J.B. Clark, R. de Frutos and M.G. Kidwell. 1998. Molecular evolution of P transposable elements in the genus Drosophila. II. The obscura species group. J. Molec. Evol. 47:282-291.

Clark, J.B., P. Kim* and M.G. Kidwell. 1998. Molecular evolution of P transposable elements in the genus Drosophila. III. The melanogaster species group. Mol. Biol. Evol. 15:746-755. [*Undergraduate student]

Clark, J.B. and M.G. Kidwell. 1998. Evidence for horizontal transfer of the P transposable element between Drosophila species. In: Horizontal Transfer. M. Syvanen and C. Kado, eds. pp. 255-267. Chapman & Hall, London.

O'Grady, P.M., J.B. Clark and M.G. Kidwell. 1998. Phylogeny of the Drosophila saltans species group based on combined analysis of nuclear and mitochondrial DNA sequences. Mol. Biol. Evol. 15:656-664.

Clark, J.B. and M.G. Kidwell. 1997. A phylogenetic perspective on P transposable element evolution in Drosophila. Proc. Natl. Acad. Sci. USA. 94:11428-11433.

Lee, S.-H. and J.B. Clark. 1997. High-yield method for isolation of lambda DNA. Biotechs 23:598-600.

Clark, J.B. and M.G. Kidwell. 1996. Molecular biology and evolution of P transposable elements. Evol. Biol. 9:1-36.

Clark, J.B., T.K. Altheide*, M.J. Schlosser* and M.G. Kidwell. 1995. Molecular evolution of P transposable elements in the genus Drosophila. I. The saltans and willistoni species groups. Mol. Biol. Evol. 12:902-913. [*Undergraduate student]

Clark, J.B. 1995. Evolution and molecular phylogeny of P transposable elements in the genus Drosophila. Tsukuba (Japan) Insect Sci. Pubs. 8:13-22. [not peer reviewed]

Clark, J.B., W.P. Maddison and M.G. Kidwell. 1994. Phylogenetic analysis supports horizontal transfer of P transposable elements. Mol. Biol. Evol. 11:40-50.

Stothard, D.R., J.B. Clark and P.A. Fuerst. 1994. The ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia, and the antiquity of the genus Rickettsia. Inter. J. Syst. Bacteriol.a 44:798-804.

Houck, M.A., J.B. Clark, K.R. Peterson and M.G. Kidwell. 1991. Possible horizontal transfer of Drosophila genes by the mite Proctolaelaps regalis. Science 253:1125-1129.